STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0403Putative exported protein; Similar to Clostridium perfringens hypothetical protein Cpe1449 SWALL:Q8XKF1 (EMBL:AP003190) (53 aa) fasta scores: E(): 0.0001, 45.28 38d in 53 aa. (58 aa)    
Predicted Functional Partners:
CBO0401
Similar to Clostridium perfringens hypothetical protein Cpe1451 SWALL:Q8XKE9 (EMBL:AP003190) (323 aa) fasta scores: E(): 1.4e-30, 32.08 38d in 321 aa.
       0.639
rnhA
Ribonuclease Hi; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.598
CBO0404
Putative transcriptional regulator; Similar to Bacillus stearothermophilus transcriptional activator NprA SWALL:NPRA_BACST (SWALL:P43130) (406 aa) fasta scores: E(): 5.8e-06, 19.61 id in 413 aa, and to Bacillus subtilis response regulator aspartate phosphatase A RapA or GsiaA or spo0l or bsu12430 SWALL:RAPA_BACSU (SWALL:Q00828) (378 aa) fasta scores: E(): 0.0019, 21.46 38d in 368 aa.
       0.455
CBO0405
Putative transcriptional regulator; Similar to Bacillus thuringiensis transcriptional activator NprR nprR SWALL:Q9AQ53 (EMBL:AF220563) (425 aa) fasta scores: E(): 0.00056, 21.33 38d in 436 aa, and to Bacillus subtilis response regulator aspartate phosphatase B RapB or SpoOP or bsu36690 SWALL:RAPB_BACSU (SWALL:P70962) (377 aa) fasta scores: E(): 0.014, 20.15 id in 377 aa.
       0.441
ftsH
Cell division protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
       0.415
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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