Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0407Putative hydratase; Similar to Pseudomonas putida isonitrile hydratase InhA SWALL:Q8G9F9 (EMBL:AB088117) (228 aa) fasta scores: E(): 1.4e-14, 30.27 38d in 185 aa, and to Pseudomonas aurantiaca DarS SWALL:Q84H27 (EMBL:AY135187) (228 aa) fasta scores: E(): 1.5e-13, 29.03 38d in 186 aa. (201 aa)    
Predicted Functional Partners:
CBO0406
Hypothetical protein; No significant database matches.
       0.671
CBO0408
Similar to Clostridium tetani conserved protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa.
       0.441
CBO0910
Putative serine peptidase; Similar over its C-terminal region to several LexA repressors including Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri lexa repressor SWALL:LEXA_ECOLI (SWALL:P03033) (202 aa) fasta scores: E(): 2.5e-07, 31.78 38d in 129 aa; Belongs to the peptidase S24 family.
   
 
 0.407
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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