STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0445Binding-protein-dependent transport system,membrane component; Similar to Listeria innocua hypothetical protein Lin1851 lin1851 SWALL:Q92AR8 (EMBL:AL596170) (213 aa) fasta scores: E(): 2.2e-40, 51.65 38d in 211 aa. (211 aa)    
Predicted Functional Partners:
CBO0446
Binding-protein-dependent transport system,permease component; Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 5.9e-25, 33.84 38d in 260 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.995
CBO2018
Probable amino acid abc transporter,substrate-binding protein.
 
 0.983
CBO1181
Putative cystine ABC transporter,substrate-binding protein.
 
 0.982
CBO0420
Probable amino acid ABC transporter, ATP binding protein; Similar to Bacillus subtilis glutamine ABC transporter GlnQ SWALL:O34677 (EMBL:Z99117) (242 aa) fasta scores: E(): 4.9e-46, 56.84 38d in 241 aa, and to Corynebacterium glutamicum glutamate transport ATP-binding protein GluA or cgl1950 SWALL:GLUA_CORGL (SWALL:P48243) (242 aa) fasta scores: E(): 2.1e-43, 56.01 38d in 241 aa.
 
 0.922
CBO2016
Probable amino acid ABC transporter, ATP-binding protein.
 
 0.922
CBO1402
Putative ABC transporter, ATP-binding protein.
 
 0.921
CBO1149
ABC transporter, ATP-binding protein.
 
 0.918
CBO1411
Putative ABC transporter, substrate-binding lipoprotein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.904
CBO1151
ABC transporter, substrate-binding lipoprotein.
 
 
 0.850
CBO1361
Putative ABC transporter, permease protein.
   
 
 0.573
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.