STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0458Conserved hypothetical protein; Similar to Methanobacterium thermoautotrophicum conserved protein mth526 SWALL:O26626 (EMBL:AE000835) (228 aa) fasta scores: E(): 1.6e-15, 32.33 38d in 201 aa. (258 aa)    
Predicted Functional Partners:
CBO0456
Branched-chain amino acid transport system,ATP-binding protein; Similar to Bordetella bronchiseptica ABC transport system ATP-binding protein bb0369 SWALL:CAE30867 (EMBL:BX640438) (244 aa) fasta scores: E(): 2e-32, 42.43 id in 238 aa.
       0.683
CBO0457
Similar to Salmonella typhimurium, and Salmonella typhi high-affinity branched-chain amino acid transport ATP-binding protein LivF or LivG or stm3560 or sty4252 or t3962 SWALL:LIVF_SALTY (SWALL:P30294) (237 aa) fasta scores: E(): 5.5e-34, 44.87 38d in 234 aa.
       0.683
CBO0453
Branched-chain amino acid transport system,substrate-binding protein; Similar to Pseudomonas aeruginosa leucine-,isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or pa1074 SWALL:BRAC_PSEAE (SWALL:P21175) (373 aa) fasta scores: E(): 3.9e-25, 29.36 id in 378 aa.
       0.664
CBO0454
Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease protein brad brad or pa1073 SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: E(): 5.6e-23, 37 38d in 300 aa.
       0.664
CBO0455
Similar to Bifidobacterium longum permease of ABC transporter for branched-chain amino acids bl1716 SWALL:Q8G3P1 (EMBL:AE014805) (358 aa) fasta scores: E(): 1.7e-36, 41.1 38d in 309 aa; Belongs to the binding-protein-dependent transport system permease family.
       0.664
CBO1413
Conserved hypothetical protein.
  
     0.527
CBO1514
Conserved hypothetical protein.
  
     0.514
CBO1489
Putative methylcobamide:CoM methyltransferase; Also similar to CBO1498 (40.6 38d.); Belongs to the uroporphyrinogen decarboxylase family.
  
     0.498
CBO2243
Putative uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.488
CBO1493
Putative methylcobamide:CoM methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.484
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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