Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0464Putative membrane protein; Similar to Clostridium tetani conserved protein ctc00359 SWALL:Q898T3 (EMBL:AE015937) (273 aa) fasta scores: E(): 3.6e-39, 52.55 38d in 274 aa. (286 aa)    
Predicted Functional Partners:
CBO0462
Putative membrane protein; Similar to Clostridium tetani lema-like protein LemA or ctc00358 SWALL:Q898T4 (EMBL:AE015937) (191 aa) fasta scores: E(): 3.8e-39, 59.57 38d in 188 aa.
 
  
 0.840
flhB
Flagellar biosynthetic protein; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
    
   0.804
CBO0482
Similar to Bacillus halodurans hypothetical protein Bh1562 SWALL:Q9KCK9 (EMBL:AP001512) (268 aa) fasta scores: E(): 4.7e-46, 45.14 38d in 268 aa.
    
   0.659
CBO3211
Conserved hypothetical protein.
  
  
 0.636
CBO0465
Conserved hypothetical protein; Similar to Bacillus anthracis mutt/nudix family protein ba3685 SWALL:Q81Y72 (EMBL:AE017035) (147 aa) fasta scores: E(): 1.4e-06, 35.29 38d in 136 aa; Belongs to the Nudix hydrolase family.
       0.414
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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