STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0477ArsR-family transcriptional regulator; Similar to Synechocystis sp. transcriptional repressor smtb homolog smtb or ziar or sll0792 SWALL:SMTB_SYNY3 (SWALL:Q55940) (132 aa) fasta scores: E(): 7.6e-17, 37.06 38d in 116 aa. (121 aa)    
Predicted Functional Partners:
cadA
Similar to Synechocystis sp. zinc-transporting ATPase ZiaA or slr0798 SWALL:ATZN_SYNY3 (SWALL:Q59998) (721 aa) fasta scores: E(): 7.1e-108, 44.69 38d in 745 aa,and to Helicobacter pylori cadmium, zinc and cobalt transporting ATPase CadA or hp0791 SWALL:HMCT_HELPY (SWALL:Q59465) (686 aa) fasta scores: E(): 8.6e-88, 39.43 id in 738 aa.
 
  
 0.968
CBO1304
Putative heavy-meta-transporting P-type ATPase.
 
  
 0.755
CBO0183
Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Fusobacterium nucleatum coenzyme a disulfide reductase/ disulfide bond regulator domain fn1903 SWALL:Q8RHU1 (EMBL:AE010492) (810 aa) fasta scores: E(): 1e-163, 56.35 38d in 818 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 coenzyme a disulfide reductase/ disulfide bond regulator domain fnv2089 SWALL:Q7P7P1 (EMBL:AABF01000012) (809 aa) fasta scores: E(): 2.7e-159, 55.5 38d in 818 aa; Belongs to the sulfur carrier protein TusA family.
  
  
 0.507
CBO0476
Similar to Clostridium acetobutylicum hypothetical protein Cac3540 SWALL:Q97DD8 (EMBL:AE007850) (53 aa) fasta scores: E(): 1.8e-13, 60 38d in 50 aa.
       0.498
CBO0841
Putative efflux protein.
  
  
 0.468
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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