STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0483Conserved hypothetical protein; Similar to Clostridium perfringens probable phosphate starvation inducible protein cpe1665 SWALL:Q8XJT8 (EMBL:AP003191) (459 aa) fasta scores: E(): 2.2e-118, 69.71 38d in 459 aa. (458 aa)    
Predicted Functional Partners:
CBO0485
Similar to Clostridium tetani conserved protein ctc00792 SWALL:Q897E8 (EMBL:AE015938) (343 aa) fasta scores: E(): 1e-48, 40.81 38d in 343 aa.
       0.669
CBO0495
Putative membrane-associated protease; Similar to Clostridium tetani protein with metal dependent protease domain ctc00793 SWALL:Q897E7 (EMBL:AE015938) (213 aa) fasta scores: E(): 8.2e-48,59.33 38d in 209 aa.
  
    0.574
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.504
CBO0484
Putative exported protein; Similar to Clostridium tetani conserved protein ctc00791 SWALL:Q897E9 (EMBL:AE015938) (335 aa) fasta scores: E(): 1.1e-77, 64.47 38d in 335 aa.
       0.494
cafA
Ribonuclease G.
  
    0.481
birA
BirA bifunctional protein [includes: biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.465
purL
Formylglycinamidine ribonucleotide synthetase.
       0.465
perR
Putative oxidative stress regulatory protein; Belongs to the Fur family.
 
     0.413
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.