Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0495Putative membrane-associated protease; Similar to Clostridium tetani protein with metal dependent protease domain ctc00793 SWALL:Q897E7 (EMBL:AE015938) (213 aa) fasta scores: E(): 8.2e-48,59.33 38d in 209 aa. (216 aa)    
Predicted Functional Partners:
sagI
Putative cytolysin ABC transporter; Similar to Streptococcus iniae SagI sagI SWALL:Q8GP10 (EMBL:AF465842) (372 aa) fasta scores: E(): 2.3e-37, 32.04 38d in 362 aa.
  
    0.531
sagG
Putative cytolysin ABC transporter, ATP-binding protein; Similar to Streptococcus iniae SagG SWALL:Q8GP12 (EMBL:AF465842) (307 aa) fasta scores: E(): 2.7e-49,50.47 38d in 313 aa.
       0.509
sagH
Putative cytolysin ABC transporter; Similar to Streptococcus iniae SagH sagH SWALL:Q8GP11 (EMBL:AF465842) (375 aa) fasta scores: E(): 1e-37, 30.58 38d in 376 aa.
       0.495
CBO3006
Putative exported protein.
  
  
 0.471
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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