Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0496Hypothetical protein; No significant database matches. (156 aa)    
Predicted Functional Partners:
CBO0497
Similar to Staphylococcus aureus arsenical pump membrane protein ArsB SWALL:ARSB_STAAU (SWALL:P30329) (429 aa) fasta scores: E(): 8.8e-19, 23.55 38d in 433 aa, and to Bacillus anthracis arsenical pump family protein ba5143 SWALL:Q81K62 (EMBL:AE017039) (444 aa) fasta scores: E(): 2.4e-82, 52.9 38d in 431 aa.
 
     0.810
CBO3075
Conserved hypothetical protein.
  
     0.521
CBO2773
Conserved hypothetical protein.
  
     0.472
CBO1298
Putative cell wall anchored protein.
  
     0.470
CBO0738
Putative membrane protein.
  
     0.408
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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