Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0535PemK-family protein. (196 aa)    
Predicted Functional Partners:
CBO3396
Putative CopG-family transcriptional regulator.
  
 
 0.854
CBO1862
Conserved hypothetical protein.
  
 
 0.773
xerD1
Tyrosine recombinase; This CDS is also similar to CBO1865 (27.541 identity in 305 aa overlap); Belongs to the 'phage' integrase family.
      
 0.684
CBO0324
Putative membrane protein; Similar to Clostridium tetani conserved protein,putative murein hydrolase exporter ctc01825 SWALL:Q893J3 (EMBL:AE015942) (117 aa) fasta scores: E(): 1.9e-30,67.52 38d in 117 aa.
      
 0.637
CBO3104
Putative capsular polysaccharide biosynthesis leucine rich repeat protein; Similar to N-terminal region of Bacillus cereus internalin protein bc0552 SWALL:Q81I65 (EMBL:AE016999) (886 aa) fasta scores: E(): 7.1e-21, 30.16 38d in 358 aa,and to C-terminal region of Clostridium acetobutylicum possible surface protein, responsible for cell interaction, contains cell adhesion domain and chw-repeats cac3279 SWALL:Q97E37 (EMBL:AE007824) (808 aa) fasta scores: E(): 3.3e-26, 35.25 38d in 312 aa.
      
 0.636
CBO0534
Probable chromate transport protein; Similar to N-terminal region of Pseudomonas aeruginosa chromate transport protein ChrA SWALL:CHRA_PSEAE (SWALL:P14285) (416 aa) fasta scores: E(): 2e-07, 28.35 38d in 134 aa.
       0.525
CBO0533
Probable chromate transport protein; Similar to the C-terminal region of Pseudomonas aeruginosa chromate transport protein ChrA SWALL:CHRA_PSEAE (SWALL:P14285) (416 aa) fasta scores: E(): 2e-08, 28.24 38d in 177 aa.
       0.524
CBO0861
Putative transcriptional regulator.
   
    0.514
hxlR
Putative transcriptional regulator.
   
    0.514
xerD2
Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family.
      
 0.444
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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