STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (360 aa)    
Predicted Functional Partners:
potCD
Spermidine/putrescine transport system permease protein; The N-terminal and C-terminal halves of this CDS are similar to Escherichia coli PotC and PotD,respectively. This indicate that this CDS resulted from a fusion between two adjacent CDSs.
 
 
 0.999
potB
Spermidine/putrescine transport system permease protein.
 0.998
CBO1109
Putative polyamine transport system, permease protein.
 
  
 0.829
potB-2
Putative polyamine transport system, permease protein.
 
 
 0.808
CBO1154
Putative iron ABC transporter, permease protein.
 
  
 0.678
modB-2
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
 0.572
CBO1153
Putative iron ABC transporter, solute-binding lipoprotein.
 
  
 0.570
CBO1516
ABC transporter, permease protein.
 
   
 0.498
opuCB
Glycine betaine/carnitine/choline transport system permease protein opucb.
 
 
 0.477
CBO1517
ABC transporter, permease protein.
  
   
 0.455
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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