Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO0570Putative protease. (334 aa)    
Predicted Functional Partners:
CBO0569
Hypothetical protein; Similar to C-terminal region of Thermoplasma acidophilum protease synthase and sporulation negative regulatory protein ta0375 SWALL:Q9HL56 (EMBL:AL445064) (154 aa) fasta scores: E(): 8.9, 30 38d in 70 aa.
       0.773
CBO0568
Hypothetical protein; No significant database matches.
       0.709
CBO2216
Putative exported protein; No significant database matches to the full length CDS. N-terminal region is similar to Clostridium tetani conserved protein CTC01609 SWALL:Q894D9 (EMBL:AE015941) (307 aa) fasta scores: E(): 3.3e-70, 62.58 38d in 310 aa. C-terminal region is similar to Bacteroides thetaiotaomicron hypothetical protein BT2193 SWALL:Q8A5P5 (EMBL:AE016935) (557 aa) fasta scores: E(): 1.3e-47,32.73 38d in 498 aa. Possible bifunctional protein.
  
     0.581
sagD
Putative cytolysin-associated protein; Similar to Streptococcus iniae SagD sagD SWALL:Q8GP15 (EMBL:AF465842) (453 aa) fasta scores: E(): 9.8e-91, 51.54 38d in 454 aa.
  
    0.521
CBO1364
Putative membrane protein; Limited similarity to the database matches mentioned.
  
     0.478
CBO1559
Putative membrane protein.
  
     0.429
CBO0567
Putative metal-dependent phosphohydrolase.
  
    0.419
CBO0632
Conserved hypothetical protein.
  
     0.418
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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