STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0571Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
CBO0237
Similar to Streptomyces sp. JP95 putative fad-binding oxidoreductase Grho1 grho1 SWALL:Q8KSY2 (EMBL:AF509565) (467 aa) fasta scores: E(): 2.5e-25,30.81 38d in 464 aa, and to Bacillus cereus FAD-dependent oxidase bc0412 SWALL:Q81IH6 (EMBL:AE016999) (444 aa) fasta scores: E(): 5.9e-95, 52.16 38d in 439 aa.
  
     0.584
CBO0107
Solute-binding protein; Similar to Agrobacterium radiobacter lactose-binding protein precursor LacE SWALL:LACE_AGRRD (SWALL:P29822) (422 aa) fasta scores: E(): 1.9e-12, 21.24 id in 386 aa, and to Clostridium acetobutylicum sugar-binding periplasmic protein cac2912 SWALL:Q97F41 (EMBL:AE007788) (432 aa) fasta scores: E(): 4.3e-18,22.63 38d in 433 aa.
  
     0.458
CBO0266
Putative FAD-dependent oxidoreductase; Similar to Clostridium perfringens probable reticuline oxidase cpe0406 SWALL:Q8XND2 (EMBL:AP003186) (448 aa) fasta scores: E(): 4.9e-57, 42.33 38d in 352 aa.
  
     0.455
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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