Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0586Putative permease. (820 aa)    
Predicted Functional Partners:
CBO0587
ABC transporter, ATP-binding protein.
 
 
 0.877
CBO0585
Putative GnaT-family acetyltransferase.
       0.783
CBO0584
Putative lipoprotein.
       0.702
CBO0783
ABC transporter, ATP-binding protein.
 
 
 0.677
CBO1950
ABC transporter, ATP-binding protein.
 
 
 0.563
CBO3398
Putative exported protein.
   
 
 0.532
CBO0904
ABC transporter, ATP-binding/permease protein.
  
 
 0.530
CBO0583
ABC transporter ATP-binding/permease protein.
       0.474
CBO0086
Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00485 SWALL:Q898G7 (EMBL:AE015937) (238 aa) fasta scores: E(): 1.8e-49, 64.31 38d in 227 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, ATPase components phnl2 or tte1199 SWALL:Q8RAL4 (EMBL:AE013082) (231 aa) fasta scores: E(): 9e-49, 62.55 38d in 227 aa.
  
 
 0.471
CBO1224
Transporter, ATP-binding protein.
  
 
 0.471
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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