Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0590Conserved hypothetical protein. (288 aa)    
Predicted Functional Partners:
CBO2497
Putative phosphatase protein.
 
 0.992
CBO2498
Conserved hypothetical protein.
 
    0.718
CBO0829
Hypothetical protein; Similar to internal regions of several including Clostridium perfringens hypothetical protein Cpe1732 cpe1732 SWALL:Q8XJM4 (EMBL:AP003191) (548 aa) fasta scores: E(): 0.00013, 35.06 38d in 77 aa.
 
 
 0.602
CBO0589
Conserved hypothetical protein.
       0.596
CBO0591
Putative membrane protein.
       0.408
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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