Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBO0612Putative membrane protein. (379 aa)    
Predicted Functional Partners:
CBO0613
Two-component response regulator.
 
    0.726
CBO0614
Two-component sensor kinase.
 
 
   0.695
CBO3253
Hypothetical protein.
  
  
 0.642
fruK
1-phosphofructokinase; This CDS is also similar to CBO1992 (35.644 identity in 303 aa overlap); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.641
pfkB
Probable sugar kinase; This CDS is also similar to CBO1763 (35.644 identity in 303 aa overlap); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.641
grdX
Putative component of glycine reductase complex.
  
     0.623
CBO3246
Conserved hypothetical protein.
  
     0.523
CBO0655
PTS system, beta-glucoside-specific IIabc component.
   
  
 0.497
bglF
PTS system, beta-glucoside-specific IIabc component.
   
  
 0.497
ptsG-2
PTS system, glucose-specific IIABC component.
   
  
 0.497
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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