STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0620TetR-family transcriptional regulator. (205 aa)    
Predicted Functional Partners:
CBO0621
Putative acetyltransferase.
 
     0.774
CBO0430
Similar to Bacteroides thetaiotaomicron transcriptional regulator bt0507 SWALL:Q8AAF8 (EMBL:AE016928) (202 aa) fasta scores: E(): 9.5e-06,26.31 38d in 190 aa.
  
     0.632
CBO0856
Putative acetyltransferase.
  
     0.606
CBO1781
Putative exported protein; No significant database matches.
  
    0.578
CBO0778
Putative membrane protein.
 
     0.567
CBO2781
AraC-family transcriptional regulator.
 
  
 0.564
CBO3364
Conserved hypothetical protein.
  
     0.562
CBO2070
Conserved hypothetical protein.
  
    0.558
CBO1013
Putative cyclase.
  
     0.544
CBO2179
Conserved hypothetical protein.
  
     0.539
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.