Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0621Putative acetyltransferase. (156 aa)    
Predicted Functional Partners:
CBO0620
TetR-family transcriptional regulator.
 
     0.774
CBO0778
Putative membrane protein.
  
     0.697
CBO1383
Putative ABC transporter, permease protein.
  
     0.672
CBO0413
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00544 SWALL:Q898B9 (EMBL:AE015937) (381 aa) fasta scores: E(): 8.2e-56, 44.75 38d in 362 aa.
  
     0.667
CBO1781
Putative exported protein; No significant database matches.
  
    0.618
CBO2132
Conserved hypothetical protein.
  
     0.604
CBO0845
Putative ABC transporter, membrane protein.
  
     0.589
CBO1382
Putative ABC transporter, permease protein.
  
     0.584
CBO2070
Conserved hypothetical protein.
  
     0.571
CBO2179
Conserved hypothetical protein.
  
     0.556
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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