STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hsdMType I restriction enzyme M subunit. (485 aa)    
Predicted Functional Partners:
hsdS
Type I restriction enzyme S subunit.
 
 
 0.999
hsdR
Type I restriction enzyme R subunit.
 
 
 0.988
selO
Conserved hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
      
 0.548
CBO1871
DNA integration/recombination protein.
 
   
 0.466
CBO0101
Conserved hypothetical protein; Similar to Clostridium tetani DNA helicase ctc00264 SWALL:Q899C1 (EMBL:AE015936) (1352 aa) fasta scores: E(): 1e-180, 40.17 38d in 1359 aa, and to Clostridium acetobutylicum superfamily i DNA helicase cac3036 SWALL:Q97ES1 (EMBL:AE007800) (1351 aa) fasta scores: E(): 2.2e-177, 41.54 38d in 1343 aa.
 
  
 0.435
CBO0677
Conserved hypothetical protein.
       0.413
CBO3090
Putative DNA modification methyltransferase.
  
   
 0.410
CBO0680
Hypothetical protein; No significant database matches.
     
 0.405
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
    
 
 0.403
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.