Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0685AraC-family transcriptional regulator. (273 aa)    
Predicted Functional Partners:
CBO1598
AraC-family transcriptional regulator.
  
     0.764
CBO0300
Similar to Clostridium tetani transcriptional regulatory protein ctc01411 SWALL:Q894X3 (EMBL:AE015941) (329 aa) fasta scores: E(): 4.8e-11, 27.5 38d in 349 aa.
  
     0.761
CBO0623
AraC-family transcriptional regulator.
  
     0.743
CBO0305
Similar to Clostridium tetani transcriptional regulatory protein ctc00913 SWALL:Q896T5 (EMBL:AE015939) (334 aa) fasta scores: E(): 1.4e-09, 26.42 38d in 333 aa.
  
     0.734
nifE1
Nitrogenase iron-molybdenum cofactor biosynthesis protein.
 
     0.730
CBO2280
AraC family regulatory protein.
  
     0.715
fhuD2
Iron-uptake system binding protein.
 
    0.695
CBO0564
AraC-family transcriptional regulator.
 
   0.681
CBO1044
AraC-family transcriptional regulator.
  
     0.678
CBO1049
AraC-family transcriptional regulator.
  
     0.678
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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