STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nifE1Nitrogenase iron-molybdenum cofactor biosynthesis protein. (422 aa)    
Predicted Functional Partners:
nifH
Nitrogenase iron protein; Belongs to the NifH/BchL/ChlL family.
 
 
 0.995
nifE2
Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE.
 
     0.936
fhuD2
Iron-uptake system binding protein.
 
     0.822
fhuC2
Ferrichrome transport ATP-binding protein.
 
     0.771
CBO0685
AraC-family transcriptional regulator.
 
     0.730
CBO2079
Putative transmembrane protein.
 
  
 0.683
CBO2080
Putative AraC-family transcriptional regulator.
  
     0.636
CBO2078
Putative transmembrane protein.
  
     0.597
fhuG2
Ferrichrome transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.535
fhuB2
Ferrichrome transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.533
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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