STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0695Conserved hypothetical protein. (469 aa)    
Predicted Functional Partners:
CBO0405
Putative transcriptional regulator; Similar to Bacillus thuringiensis transcriptional activator NprR nprR SWALL:Q9AQ53 (EMBL:AF220563) (425 aa) fasta scores: E(): 0.00056, 21.33 38d in 436 aa, and to Bacillus subtilis response regulator aspartate phosphatase B RapB or SpoOP or bsu36690 SWALL:RAPB_BACSU (SWALL:P70962) (377 aa) fasta scores: E(): 0.014, 20.15 id in 377 aa.
  
     0.680
CBO0170
Similar to Clostridium tetani conserved protein ctc00323 SWALL:Q898W5 (EMBL:AE015937) (354 aa) fasta scores: E(): 9.6e-44, 38.26 38d in 345 aa.
  
     0.628
CBO3564
Conserved hypothetical protein.
  
     0.603
CBO1137
Conserved hypothetical protein.
  
     0.556
CBO0413
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00544 SWALL:Q898B9 (EMBL:AE015937) (381 aa) fasta scores: E(): 8.2e-56, 44.75 38d in 362 aa.
  
     0.533
CBO0064
Similar to Clostridium perfringens hypothetical protein Cpe0282 SWALL:Q8XNQ0 (EMBL:AP003186) (199 aa) fasta scores: E(): 9.2e-42, 63.59 38d in 195 aa, and to Clostridium acetobutylicum uncharacterized protein homolog ykrk b. subtilis cac0314 SWALL:Q97M84 (EMBL:AE007546) (197 aa) fasta scores: E(): 6.5e-41, 59.89 38d in 187 aa.
  
     0.519
CBO3314
Putative nuclease.
  
     0.506
CBO2633
Putative membrane protein.
  
     0.466
CBO0675
Putative dihydrouridine synthase (tRNA modification protein); Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
     0.430
CBO3436
TPR-repeat-containing protein.
 
    0.419
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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