STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0710Putative drug resistance ABC-transporter,membrane protein. (248 aa)    
Predicted Functional Partners:
CBO0709
Putative drug resistance ABC transporter,ATP-binding protein.
 
  
 0.978
CBO0708
MerR-family transcriptional regulator.
 
    0.948
CBO2245
MerR family regulatory protein.
 
    0.639
CBO0663
Conserved hypothetical protein.
  
     0.615
sagD
Putative cytolysin-associated protein; Similar to Streptococcus iniae SagD sagD SWALL:Q8GP15 (EMBL:AF465842) (453 aa) fasta scores: E(): 9.8e-91, 51.54 38d in 454 aa.
  
  
 0.605
CBO0544
Putative acetyltransferase.
  
   
 0.584
CBO0443
Similar to Methanosarcina mazei conserved protein mm1395 SWALL:Q8PX27 (EMBL:AE013374) (154 aa) fasta scores: E(): 8e-25, 48.36 38d in 153 aa.
 
     0.560
CBO1995
Conserved hypothetical protein.
  
     0.478
CBO3142
ABC transporter ATP-binding protein.
 
  
 0.470
sagG
Putative cytolysin ABC transporter, ATP-binding protein; Similar to Streptococcus iniae SagG SWALL:Q8GP12 (EMBL:AF465842) (307 aa) fasta scores: E(): 2.7e-49,50.47 38d in 313 aa.
 
  
 0.449
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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