STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0713Conserved hypothetical protein; Also similar to CBO2045 (67.1 38d). (235 aa)    
Predicted Functional Partners:
CBO0714
AraC-family transcriptional regulator.
 
     0.642
CBO0443
Similar to Methanosarcina mazei conserved protein mm1395 SWALL:Q8PX27 (EMBL:AE013374) (154 aa) fasta scores: E(): 8e-25, 48.36 38d in 153 aa.
 
     0.612
CBO0328
Conserved hypothetical protein; Similar to the C-terminal region of Clostridium acetobutylicum uncharacterized conserved protein cac3492 SWALL:Q97DI5 (EMBL:AE007846) (290 aa) fasta scores: E(): 3.4e-15, 41.04 38d in 134 aa.
 
     0.447
CBO2245
MerR family regulatory protein.
  
     0.428
CBO0716
Putative transcriptional regulator (partial); Partial CDS. Similar to the C-terminal region of Clostridium tetani putative transcriptional regulatory protein ctc01439 SWALL:Q894U5 (EMBL:AE015941) (235 aa) fasta scores: E(): 2.1e-12, 41.81 38d in 110 aa; was marked partial.
  
     0.416
CBO0710
Putative drug resistance ABC-transporter,membrane protein.
  
     0.406
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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