STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0735Putative phage replication protein. (419 aa)    
Predicted Functional Partners:
CBO0736
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
  
    0.726
CBO1721
Terminase small subunit.
  
  
 0.698
CBO1722
Terminase large subunit.
  
  
 0.661
CBO2355
Terminase large subunit.
  
  
 0.661
CBO1723
Portal protein.
  
  
 0.644
CBO0734
Putatative phage-related repressor.
       0.525
CBO0737
Conserved hypothetical protein.
       0.510
CBO1382
Putative ABC transporter, permease protein.
  
    0.477
CBO2070
Conserved hypothetical protein.
 
  
 0.426
CBO0778
Putative membrane protein.
  
     0.425
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.