STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0767Putative ABC transporter, permease protein; Highly similar to upstream CDS CBO0766 (89.9 38d). (378 aa)    
Predicted Functional Partners:
CBO0765
ABC transporter, ATP-binding protein.
 
 
 0.698
CBO0856
Putative acetyltransferase.
  
     0.599
CBO3351
ABC transporter, ATP-binding protein.
 
 
 0.567
CBO3174
Conserved integral membrane protein.
  
     0.563
CBO0862
Putative nitroreductase.
  
     0.484
CBO1929
ABC transporter, ATP-binding protein.
 
 
 0.453
CBO1188
Putative ABC transporter, ATP-binding protein.
 
 
 0.446
cotS
Spore coat protein S.
  
     0.446
CBO2283
ABC transporter, ATP-binding protein.
 
 
 0.432
CBO0766
ABC transporter, permease protein; Highly similar to downstream CDS CBO0767 (89.9 id).
 
    
0.431
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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