STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0777ABC transporter, ATP-binding protein. (306 aa)    
Predicted Functional Partners:
CBO0778
Putative membrane protein.
 
   0.886
CBO3350
Putative lipoprotein.
 
 
 0.561
CBO0780
Two component sensor kinase.
 
 
   0.517
CBO1583
Putative lantibiotic ABC transporter, permease protein.
 
  
 0.482
CBO1584
Putative lantibiotic ABC transporter, permease protein.
 
  
 0.472
CBO0784
Putative permease.
  
    0.468
CBO1189
Putative membrane protein.
 
   0.439
CBO0779
AraC-family transcriptional regulator.
       0.422
CBO0766
ABC transporter, permease protein; Highly similar to downstream CDS CBO0767 (89.9 id).
 
 
 0.407
CBO1382
Putative ABC transporter, permease protein.
 
  
 0.407
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.