CBO0780 protein (Clostridium botulinum A ATCC 3502)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CBO0780

Two component sensor kinase. (301 aa)

Predicted Functional Partners:

CBO0776

0.834

CBO2285

0.828

CBO3349A

0.826

CBO0365

0.817

CBO0506

0.813

CBO0610

0.811

CBO1968

0.810

CBO1613

0.809

CBO1926

0.807

CBO1041

0.805

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CBO0365	CBO0780	Two-component response regulator; Similar to Enterococcus faecium regulatory protein VanR vanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 2.2e-41, 51.94 38d in 231 aa.	Two component sensor kinase.	0.817
CBO0365	CBO1968	Two-component response regulator; Similar to Enterococcus faecium regulatory protein VanR vanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 2.2e-41, 51.94 38d in 231 aa.	Two-component response regulator.	0.909
CBO0506	CBO0610	Putative two-component response regulator.	Two-component response regulator.	0.720
CBO0506	CBO0780	Putative two-component response regulator.	Two component sensor kinase.	0.813
CBO0610	CBO0506	Two-component response regulator.	Putative two-component response regulator.	0.720
CBO0610	CBO0780	Two-component response regulator.	Two component sensor kinase.	0.811
CBO0776	CBO0780	Two-component response regulator.	Two component sensor kinase.	0.834
CBO0780	CBO0365	Two component sensor kinase.	Two-component response regulator; Similar to Enterococcus faecium regulatory protein VanR vanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 2.2e-41, 51.94 38d in 231 aa.	0.817
CBO0780	CBO0506	Two component sensor kinase.	Putative two-component response regulator.	0.813
CBO0780	CBO0610	Two component sensor kinase.	Two-component response regulator.	0.811
CBO0780	CBO0776	Two component sensor kinase.	Two-component response regulator.	0.834
CBO0780	CBO1041	Two component sensor kinase.	Two-component response regulator.	0.805
CBO0780	CBO1613	Two component sensor kinase.	Two-component response regulator.	0.809
CBO0780	CBO1926	Two component sensor kinase.	Two-component response regulator.	0.807
CBO0780	CBO1968	Two component sensor kinase.	Two-component response regulator.	0.810
CBO0780	CBO2285	Two component sensor kinase.	Two-component response regulator.	0.828
CBO0780	CBO3349A	Two component sensor kinase.	Two-component response regulator.	0.826
CBO1041	CBO0780	Two-component response regulator.	Two component sensor kinase.	0.805
CBO1613	CBO0780	Two-component response regulator.	Two component sensor kinase.	0.809
CBO1926	CBO0780	Two-component response regulator.	Two component sensor kinase.	0.807