Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0781Conserved hypothetical protein. (331 aa)    
Predicted Functional Partners:
CBO1626
Putative membrane protein.
  
    0.486
CBO0043A
Similar to Clostridium tetani conserved protein ctc01787 SWALL:Q893M8 (EMBL:AE015942) (477 aa) fasta scores: E(): 5.7e-98, 58.62 38d in 481 aa, and to Bacillus anthracis conserved domain protein ba1754 SWALL:Q81SB1 (EMBL:AE017029) (366 aa) fasta scores: E(): 9.9e-18, 27.1 id in 380 aa.
  
    0.485
ecsC
Putative membrane protein.
  
     0.477
CBO2062
Putative membrane protein.
  
     0.455
CBO0856
Putative acetyltransferase.
  
     0.452
CBO1219
Putative hydrolase; Belongs to the 5'(3')-deoxyribonucleotidase family.
  
     0.446
CBO0560
Putative membrane protein.
  
    0.444
CBO2054
Probable glycosyl transferase.
  
     0.440
CBO1625
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.436
CBO0674
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.430
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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