STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0784Putative permease. (888 aa)    
Predicted Functional Partners:
CBO0783
ABC transporter, ATP-binding protein.
 
 
 0.957
CBO0787
Two component sensor kinase.
 
 
   0.812
xerD1
Tyrosine recombinase; This CDS is also similar to CBO1865 (27.541 identity in 305 aa overlap); Belongs to the 'phage' integrase family.
   
    0.595
CBO0786
Two component response regulator.
 
     0.580
CBO2147
ABC transporter, ATP-binding protein; CDS overlaps 20 nt at the C-terminus with CBO2146.
 
 
 0.536
CBO3398
Putative exported protein.
   
 
 0.532
CBO0904
ABC transporter, ATP-binding/permease protein.
  
 
 0.530
CBO0587
ABC transporter, ATP-binding protein.
  
 
 0.498
CBO1950
ABC transporter, ATP-binding protein.
  
 
 0.491
CBO1224
Transporter, ATP-binding protein.
  
 
 0.472
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.