Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0788Conserved hypothetical protein. (213 aa)    
Predicted Functional Partners:
CBO2612
Putative iron-sulfur protein.
 
 
 0.746
CBO0787
Two component sensor kinase.
       0.455
nifJ2
Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).
     
 0.419
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
  
  
 0.418
CBO0039
Putative 4Fe-4S ferredoxin; Similar to Clostridium tetani putative polyferredoxin ctc00067 SWALL:Q899U9 (EMBL:AE015936) (258 aa) fasta scores: E(): 2.3e-44, 50.95 38d in 263 aa, and to Clostridium acetobutylicum polyferredoxin cac2657 SWALL:Q97FS0 (EMBL:AE007763) (249 aa) fasta scores: E(): 4.7e-20, 35.65 38d in 258 aa.
  
 
 
 0.408
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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