Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO0833Putative spore coat polysacharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family. (391 aa)    
Predicted Functional Partners:
CBO2725
Polysaccharide biosynthesis protein; Similar to the C-terminal region of Staphylococcus aureus capsular polysaccharide biosynthesis protein CapD SWALL:CAPD_STAAU (SWALL:P39853) (599 aa) fasta scores: E(): 3e-31, 37.5 38d in 336 aa, and to the full length Clostridium acetobutylicum predicted nucleoside-diphosphate sugar epimerase CAC2194 SWALL:Q97H20 (EMBL:AE007719) (340 aa) fasta scores: E(): 3.2e-81, 68.03 38d in 341 aa.
 
  
 0.893
CBO3109
Capsular polysaccharide biosynthesis protein.
 
  
 0.876
CBO3108
Putative UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.784
CBO2721
Putative 3-deoxy-manno-octulosonate cytidylyltransferase.
 
  
 0.673
CBO3106
Putative capsular polysaccharide biosynthesis transferase.
 
   0.673
CBO2681
Putative Cytidylyltransferase; Note that the C_terminal region is most similar to the Clostridial spore coat proteins.
 
  
 0.658
CBO0832
MerR-family transcriptional regulator.
  
  
 0.640
CBO3107
Putative lipopolysaccharide biosynthesis oxidoreductase.
 
  
 0.633
CBO2766A
Putative glucose translocase.
  
  
 0.620
degT
Putative pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.
 
    
0.618
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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