STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0840Putative non-heme chloroperoxidase; This CDS is also similar to CBO0849 (93.333 identity in 270 aa overlap). (270 aa)    
Predicted Functional Partners:
CBO2587
Putative AMP-binding enzyme; Similar to an internal region of Bacillus licheniformis bacitracin synthetase 1 BacA SWALL:BACA_BACLI (SWALL:O68006) (5255 aa) fasta scores: E(): 4.3e-49, 33.15 38d in 561 aa.
 
 
 0.556
CBO0839
Putative membrane protein; No significant database matches.
       0.522
CBO2843
acyl-CoA dehydrogenase.
  
 0.491
fabG
3-oxoacyl-[acyl-carrier protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.479
CBO0838
Putative flavoredoxin.
  
  
 0.432
birA
BirA bifunctional protein [includes: biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.428
CBO1664
Short-chain dehydrogenase.
 
 0.415
CBO2293
Short chain dehydrogenase; C-terminal region is similar to Bacillus megaterium glucose 1-dehydrogenase III GdhIII SWALL:DHG3_BACME (SWALL:P39484) (261 aa) fasta scores: E(): 2.9e-23, 34.41 id in 247 aa. Full length CDS is similar to Clostridium acetobutylicum predicted dehydrogenase of short-chain alcohol dehydrogenase family, ortholog of YhdF B.subtilis CAC1423 SWALL:Q97J63 (EMBL:AE007653) (299 aa) fasta scores: E(): 1.8e-76, 68.7 38d in 294 aa.
 
 0.413
acdB
acyl-CoA dehydrogenase, short-chain specific.
   
 0.411
bcd
butyryl-CoA dehydrogenase.
   
 0.411
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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