STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0841Putative efflux protein. (222 aa)    
Predicted Functional Partners:
CBO2547
Conserved hypothetical protein; Possible alternative translational start site; Also similar to the downstream CDS CBO2546 (34.9 id).
  
     0.518
CBO2546
Conserved hypothetical protein; Also similar to the upstream CDS CBO2547 (34.9 id).
  
     0.503
CBO0842
Conserved hypothetical protein.
       0.476
CBO0477
ArsR-family transcriptional regulator; Similar to Synechocystis sp. transcriptional repressor smtb homolog smtb or ziar or sll0792 SWALL:SMTB_SYNY3 (SWALL:Q55940) (132 aa) fasta scores: E(): 7.6e-17, 37.06 38d in 116 aa.
  
  
 0.468
CBO0840
Putative non-heme chloroperoxidase; This CDS is also similar to CBO0849 (93.333 identity in 270 aa overlap).
       0.406
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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