Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0848Conserved hypothetical protein. (115 aa)    
Predicted Functional Partners:
CBO0870
Putative membrane protein.
  
     0.567
CBO2588
Putative acetyltransferase.
  
     0.528
CBO2633
Putative membrane protein.
  
     0.526
CBO0413
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00544 SWALL:Q898B9 (EMBL:AE015937) (381 aa) fasta scores: E(): 8.2e-56, 44.75 38d in 362 aa.
  
     0.499
CBO2657
Putative flagellar hook-length control protein.
  
     0.479
CBO3173
Putative TPR-family repetative protein.
  
     0.479
CBO0405
Putative transcriptional regulator; Similar to Bacillus thuringiensis transcriptional activator NprR nprR SWALL:Q9AQ53 (EMBL:AF220563) (425 aa) fasta scores: E(): 0.00056, 21.33 38d in 436 aa, and to Bacillus subtilis response regulator aspartate phosphatase B RapB or SpoOP or bsu36690 SWALL:RAPB_BACSU (SWALL:P70962) (377 aa) fasta scores: E(): 0.014, 20.15 id in 377 aa.
  
    0.457
CBO0871
Conserved hypothetical protein; Similar to The C-terminal regions of several regulators including Escherichia coli, and Escherichia coli O157:H7 regulatory protein nsr nsr or b2163 or z3420 or ecs3055 SWALL:NSR_ECOLI (SWALL:P33023) (219 aa) fasta scores: E(): 0.029, 28.44 38d in 116 aa, and to Bacillus cereus catabolite gene activator bc3449 SWALL:Q81AV5 (EMBL:AE017009) (230 aa) fasta scores: E(): 1.3e-09,34.95 38d in 123 aa.
  
     0.454
CBO0443
Similar to Methanosarcina mazei conserved protein mm1395 SWALL:Q8PX27 (EMBL:AE013374) (154 aa) fasta scores: E(): 8e-25, 48.36 38d in 153 aa.
  
     0.431
CBO1024
Cyclic nucleotide-binding regulatory protein.
  
     0.412
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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