STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
licTTranscription antiterminator. (277 aa)    
Predicted Functional Partners:
bglF
PTS system, beta-glucoside-specific IIabc component.
 
 0.936
CBO0655
PTS system, beta-glucoside-specific IIabc component.
 
 0.868
ascB
6-phospho-beta-glucosidase.
 
  
 0.736
CBO1202
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
 
  
 0.635
CBO1344
PTS system, IIbc component.
 
 
 0.606
ptsG-2
PTS system, glucose-specific IIABC component.
 
 
 0.568
ptbA-3
Putative PTS system, glucose-specific IIABC component; C-terminal region is similar to Escherichia coli,Escherichia coli O6, and Escherichia coli O157:H7 PTS system, glucose-specific IIBC component PtsG or GlcA or Umg or b1101 or c1373 or z1740 or ecs1479 SWALL:PTGB_ECOLI (SWALL:P05053) (477 aa) fasta scores: E(): 2.6e-50, 42.25 id in 497 aa. Full length CDS is similar to Bacillus subtilis putative PTS system IIABC component YbfS or bsu02350 SWALL:YBFS_BACSU (SWALL:P39816) (631 aa) fasta scores: E(): 4e-56, 41.9 38d in 642 aa.
 
 
 0.558
treB
PTS system, trehalose-specific IIbc component.
 
 
 0.499
CBO0277
Similar to Bacillus subtilis PTS system,arbutin-like IIbc component GlvC or GlvCB or Glv-2 or bsu08200 SWALL:PTIB_BACSU (SWALL:P54715) (527 aa) fasta scores: E(): 8.6e-61, 36.41 38d in 530 aa, and to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIbc component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 3.3e-59, 35.53 38d in 529 aa; Also highly similar to CBO0288 (53.2 38d).
 
 
 0.427
CBO0268
Similar to Escherichia coli PTS system, maltose and glucose-specific IIabc component MalX or b1621 SWALL:PTOA_ECOLI (SWALL:P19642) (530 aa) fasta scores: E(): 6.6e-55, 40.03 38d in 522 aa.
 
 
 0.426
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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