STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0895Putative transcriptional regulator. (202 aa)    
Predicted Functional Partners:
CBO0896
Putative membrane protein.
       0.675
CBO3366
Conserved hypothetical protein.
  
     0.621
CBO2257
Conserved hypothetical protein.
  
     0.541
CBO0894
Putative porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
 
    0.534
CBO0720
Conserved hypothetical protein.
  
     0.509
CBO1527
MarR-family transcriptional regulator.
  
     0.484
CBO0760
TetR-family transcriptional regulator.
  
     0.458
CBO0856
Putative acetyltransferase.
  
     0.457
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.456
CBO0714
AraC-family transcriptional regulator.
 
     0.455
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.