STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0900Hypothetical protein; No significant database matches; Highly similar to CBO1594 (85.5 38d), CBO2273 (82.3 38d) and CBO2267 (85.5 0d). (102 aa)    
Predicted Functional Partners:
CBO3364
Conserved hypothetical protein.
  
     0.601
CBO0901
Hypothetical protein; Similar to internal regions of several including Fusobacterium nucleatum subsp. vincentii ATCC 49256 acetyltransferase fnv1635 SWALL:EAA24765 (EMBL:AABF01000017) (173 aa) fasta scores: E(): 1.1e-07,46.15 38d in 65 aa.
       0.520
CBO3396
Putative CopG-family transcriptional regulator.
  
   
 0.495
CBO1012
MarR-family transcriptional regulator.
  
     0.431
CBO0408
Similar to Clostridium tetani conserved protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa.
  
     0.423
CBO0767
Putative ABC transporter, permease protein; Highly similar to upstream CDS CBO0766 (89.9 38d).
  
     0.419
CBO0899
Hypothetical protein; No significant database matches.
       0.418
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.