STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0901Hypothetical protein; Similar to internal regions of several including Fusobacterium nucleatum subsp. vincentii ATCC 49256 acetyltransferase fnv1635 SWALL:EAA24765 (EMBL:AABF01000017) (173 aa) fasta scores: E(): 1.1e-07,46.15 38d in 65 aa. (69 aa)    
Predicted Functional Partners:
CBO2341
Hypothetical phage protein.
  
     0.588
CBO0331
Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).
  
     0.552
CBO0900
Hypothetical protein; No significant database matches; Highly similar to CBO1594 (85.5 38d), CBO2273 (82.3 38d) and CBO2267 (85.5 0d).
       0.520
CBO2350
Phage capsid protein.
  
     0.516
CBO2340
Hypothetical phage protein.
  
     0.477
CBO2332
Hypothetical phage protein; N-terminus is weakly similar to the N-terminal region of Bacillus subtilis hypothetical protein BSU25970 SWALL:YQCA_BACSU (SWALL:P45936) (192 aa) fasta scores: E(): 0.0063, 24.52 38d in 159 aa.
  
     0.474
CBO2334
Hypothetical phage protein.
  
     0.473
CBO2336
Hypothetical phage protein.
  
     0.473
CBO0717
Putative acetyltransferase.
 
    0.443
CBO2342
Hypothetical phage protein.
  
     0.439
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.