STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0904ABC transporter, ATP-binding/permease protein. (786 aa)    
Predicted Functional Partners:
CBO0085
Putative exported protein; Similar to Thermoanaerobacter tengcongensis membrane-fusion protein acra2 or tte1200 SWALL:Q8RAL3 (EMBL:AE013082) (390 aa) fasta scores: E(): 1.4e-23,37.98 38d in 387 aa, and to Clostridium tetani conserved membrane-associated protein ctc00484 SWALL:Q898G8 (EMBL:AE015937) (437 aa) fasta scores: E(): 9e-15, 25.87 id in 429 aa.
  
 
 0.899
CBO0087
Similar to Clostridium tetani ABC transporter permease protein ctc00486 SWALL:Q898G6 (EMBL:AE015937) (404 aa) fasta scores: E(): 1e-60, 47.66 38d in 407 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, permease components tte1198 SWALL:Q8RAL5 (EMBL:AE013082) (405 aa) fasta scores: E(): 4.1e-65, 50.73 38d in 406 aa.
  
 
 0.790
CBO1222
Putative ABC transporter, permease protein.
  
 
 0.769
CBO0906
Two component sensor kinase.
 
 
 0.685
CBO0905
Two component response regulator.
 
   
 0.638
CBO2146
ABC transporter, permease protein; CDS overlaps 20 nt at the N-terminus with CBO2147.
 
 
 0.596
CBO3533
Putative RNA-binding protein.
   
    0.596
CBO1951
Putative ABC transporter permease protein.
  
  
 0.555
CBO0586
Putative permease.
  
 
 0.530
CBO0784
Putative permease.
  
 
 0.530
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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