Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0930Similar to N-terminal regions of many MerR-family transcriptional regulators including Clostridium acetobutylicum transcriptional regulator, merr family cap0178 SWALL:Q97TD4 (EMBL:AE001438) (123 aa) fasta scores: E(): 0.00041, 36.97 38d in 119 aa. (424 aa)    
Predicted Functional Partners:
CBO0929
Conserved hypothetical protein.
 
     0.599
CBO0931
Putative acetyltransferase.
       0.559
CBO0928
Putative phosphohydrolase.
   
   0.427
CBO2791
Putative membrane protein.
  
     0.422
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.417
sigA
RNA polymerase sigma factor (sigma-43); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.408
glnA
Glutamine synthetase.
  
 
 0.407
CBO0941
Putative membrane protein.
 
     0.402
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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