STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0933Putative nitroreductase. (173 aa)    
Predicted Functional Partners:
CBO2331
Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.
      
 0.681
CBO0932
Conserved hypothetical protein.
       0.675
sagI
Putative cytolysin ABC transporter; Similar to Streptococcus iniae SagI sagI SWALL:Q8GP10 (EMBL:AF465842) (372 aa) fasta scores: E(): 2.3e-37, 32.04 38d in 362 aa.
  
  
 0.613
CBO0934
Putative membrane protein.
       0.610
birA
BirA bifunctional protein [includes: biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.597
sagD
Putative cytolysin-associated protein; Similar to Streptococcus iniae SagD sagD SWALL:Q8GP15 (EMBL:AF465842) (453 aa) fasta scores: E(): 9.8e-91, 51.54 38d in 454 aa.
  
  
 0.585
CBO3328
Putative phosphatase.
   
    0.524
CBO0710
Putative drug resistance ABC-transporter,membrane protein.
  
    0.504
CBO1382
Putative ABC transporter, permease protein.
  
    0.504
sagE
Putative cytolysin-associated protein; Similar to Streptococcus iniae SagE SWALL:Q8GP14 (EMBL:AF465842) (220 aa) fasta scores: E(): 1.9e-18,32.05 38d in 209 aa.
  
    0.498
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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