CBO0971 protein (Clostridium botulinum A ATCC 3502)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CBO0971

Two-component sensor kinase. (473 aa)

Predicted Functional Partners:

CBO0970

0.966

CBO1613

0.805

CBO3349A

0.800

CBO0365

0.790

CBO0610

0.782

CBO1926

0.770

CBO2285

0.764

CBO0318

0.754

CBO1394

0.749

CBO1968

0.742

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CBO0318	CBO0971	Similar to Bacillus cereus two-component response regulator bc4835 SWALL:Q816J5 (EMBL:AE017013) (231 aa) fasta scores: E(): 7.7e-51, 60.08 38d in 228 aa.	Two-component sensor kinase.	0.754
CBO0318	CBO1394	Similar to Bacillus cereus two-component response regulator bc4835 SWALL:Q816J5 (EMBL:AE017013) (231 aa) fasta scores: E(): 7.7e-51, 60.08 38d in 228 aa.	Two-component response regulator.	0.902
CBO0365	CBO0971	Two-component response regulator; Similar to Enterococcus faecium regulatory protein VanR vanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 2.2e-41, 51.94 38d in 231 aa.	Two-component sensor kinase.	0.790
CBO0365	CBO1968	Two-component response regulator; Similar to Enterococcus faecium regulatory protein VanR vanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 2.2e-41, 51.94 38d in 231 aa.	Two-component response regulator.	0.909
CBO0610	CBO0971	Two-component response regulator.	Two-component sensor kinase.	0.782
CBO0970	CBO0971	Two-component response regulator.	Two-component sensor kinase.	0.966
CBO0971	CBO0318	Two-component sensor kinase.	Similar to Bacillus cereus two-component response regulator bc4835 SWALL:Q816J5 (EMBL:AE017013) (231 aa) fasta scores: E(): 7.7e-51, 60.08 38d in 228 aa.	0.754
CBO0971	CBO0365	Two-component sensor kinase.	Two-component response regulator; Similar to Enterococcus faecium regulatory protein VanR vanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 2.2e-41, 51.94 38d in 231 aa.	0.790
CBO0971	CBO0610	Two-component sensor kinase.	Two-component response regulator.	0.782
CBO0971	CBO0970	Two-component sensor kinase.	Two-component response regulator.	0.966
CBO0971	CBO1394	Two-component sensor kinase.	Two-component response regulator.	0.749
CBO0971	CBO1613	Two-component sensor kinase.	Two-component response regulator.	0.805
CBO0971	CBO1926	Two-component sensor kinase.	Two-component response regulator.	0.770
CBO0971	CBO1968	Two-component sensor kinase.	Two-component response regulator.	0.742
CBO0971	CBO2285	Two-component sensor kinase.	Two-component response regulator.	0.764
CBO0971	CBO3349A	Two-component sensor kinase.	Two-component response regulator.	0.800
CBO1394	CBO0318	Two-component response regulator.	Similar to Bacillus cereus two-component response regulator bc4835 SWALL:Q816J5 (EMBL:AE017013) (231 aa) fasta scores: E(): 7.7e-51, 60.08 38d in 228 aa.	0.902
CBO1394	CBO0971	Two-component response regulator.	Two-component sensor kinase.	0.749
CBO1613	CBO0971	Two-component response regulator.	Two-component sensor kinase.	0.805
CBO1926	CBO0971	Two-component response regulator.	Two-component sensor kinase.	0.770