STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0974Putative iron(III) dicitrate-binding protein. (340 aa)    
Predicted Functional Partners:
CBO0973
Putative iron(III) dicitrate ABC transporter,permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.967
fecE
Putative iron(III) dicitrate ABC transporter,ATP-binding protein.
 
 
 0.966
CBO0302
Putative iron(III) transport system, permease protein; Similar to Bordetella avium BhuU bhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 1.2e-35,38.69 38d in 336 aa, and to Clostridium tetani iron(iii) dicitrate transport system permease protein fecd or ctc00961 SWALL:Q896N9 (EMBL:AE015939) (377 aa) fasta scores: E(): 9.5e-69, 53.93 38d in 343 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.877
CBO0303
Putative iron(III) transport system, ATP-binding protein; Similar to Streptococcus agalactiae FhuC fhuC SWALL:Q8VQV6 (EMBL:AF452237) (264 aa) fasta scores: E(): 5.2e-26, 31.9 38d in 257 aa, and to Clostridium tetani putative hemin transport system ATP-binding protein fece fece or ctc00962 SWALL:Q896N8 (EMBL:AE015939) (252 aa) fasta scores: E(): 4.8e-47, 55.15 38d in 252 aa.
 
 
 0.868
CBO1338
Putative iron ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.848
CBO2895
Iron compounds ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.810
fhuG2
Ferrichrome transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.724
CBO2896
Iron compounds ABC transporter, ATP-binding protein.
 
 
 0.719
fhuB2
Ferrichrome transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.715
CBO1339
Putative iron ABC transporter, ATP-binding protein.
 
 
 0.715
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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