STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dkgA2,5-diketo-D-gluconic acid reductase. (281 aa)    
Predicted Functional Partners:
gldA1
Glycerol dehydrogenase; Also similar to CBO1999 (52.5 38d).
     
 0.900
gldA2
Glycerol dehydrogenase; Also similar to CBO0976 (52.5 38d).
     
 0.900
tdcB
Threonine dehydratase catabolic.
  
 
 0.817
CBO1197
Putative flavin containing amine oxidoreductase.
   
 
 0.813
sdhB
Putative L-serine dehydratase, beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
  0.800
sdhA
Putative L-serine dehydratase, alpha chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
  0.800
divIVA
Cell-division initiation protein (minicell-associated protein).
   
    0.595
metH
Putative methionine synthase.
  
 0.592
CBO0982
Conserved hypothetical protein.
 
     0.526
CBO0985
Conserved hypothetical protein.
       0.524
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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