STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrdG-2Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. (197 aa)    
Predicted Functional Partners:
nrdD
Similar to Escherichia coli anaerobic ribonucleoside-triphosphate reductase NrdD or b4238 SWALL:NRDD_ECOLI (SWALL:P28903) (712 aa) fasta scores: E(): 3.3e-50, 32.23 38d in 726 aa, and to Clostridium acetobutylicum oxygen-sensitive ribonucleoside-triphosphate reductase NrdD cac0480 SWALL:Q97LS4 (EMBL:AE007562) (702 aa) fasta scores: E(): 1.2e-139, 74.07 38d in 706 aa.
 
 
 0.952
CBO1003
Putative ATPase.
 
     0.806
CBO1001
Putative membrane protein (competence protein).
       0.785
CBO1000
Conserved hypothetical protein.
       0.773
CBO1004
Hypothetical protein; No significant database matches.
       0.707
CBO3578
Conserved hypothetical protein.
  
 
 0.662
queC
Conserved hypothetical protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)).
  
  
 0.648
queD
Putative 6-pyruvoyl tetrahydrobiopterin synthase.
  
  
 0.631
queD-2
Conserved hypothetical protein.
  
  
 0.631
pflA
Formate acetyltransferase.
  
     0.603
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.