STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcDGlycolate oxidase subunit. (465 aa)    
Predicted Functional Partners:
etfB
Electron transfer flavoprotein beta-subunit.
 
 
 0.969
etfB-2
Electron transfer flavoprotein alpha-subunit.
 
 
 0.966
glcA
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.916
kdgA
Similar to Bacillus subtilis khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase KdgA or bsu22100 SWALL:ALKH_BACSU (SWALL:P50846) (196 aa) fasta scores: E(): 4.1e-17, 35.6 38d in 191 aa, and to Streptococcus agalactiae 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase eda-2 or sag1907 SWALL:Q8DXE4 (EMBL:AE014277) (212 aa) fasta scores: E(): 1.6e-39, 54.76 38d in 210 aa.
   
 
 0.913
etfA1
Electron transfer flavoprotein alpha-subunit.
  
 
 0.848
CBO3197
Electron transfer flavoprotein alpha-subunit.
  
 
 0.848
CBO2612
Putative iron-sulfur protein.
  
  
 0.834
CBO1006
Conserved hypothetical protein.
 
   
 0.827
etfB1
Electron transfer flavoprotein beta-subunit.
  
 
 0.726
CBO3198
Electron transfer flavoprotein beta-subunit.
  
 
 0.726
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.