STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO1012MarR-family transcriptional regulator. (156 aa)    
Predicted Functional Partners:
CBO1013
Putative cyclase.
 
     0.906
CBO0183
Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Fusobacterium nucleatum coenzyme a disulfide reductase/ disulfide bond regulator domain fn1903 SWALL:Q8RHU1 (EMBL:AE010492) (810 aa) fasta scores: E(): 1e-163, 56.35 38d in 818 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 coenzyme a disulfide reductase/ disulfide bond regulator domain fnv2089 SWALL:Q7P7P1 (EMBL:AABF01000012) (809 aa) fasta scores: E(): 2.7e-159, 55.5 38d in 818 aa; Belongs to the sulfur carrier protein TusA family.
  
  
 0.542
CBO1015
Putative cyclase.
 
     0.499
opuCB
Glycine betaine/carnitine/choline transport system permease protein opucb.
  
  
 0.462
CBO0645
MarR-family transcriptional regulator.
  
   
 0.457
CBO2164
AraC family regulatory protein; N-terminal region is similar to Escherichia coli,Escherichia coli O6, and Escherichia coli O157:H7 regulatory protein SoxS or b4062 or c5053 or z5661 or ecs5044 SWALL:SOXS_ECOLI (SWALL:P22539) (106 aa) fasta scores: E(): 7.2e-08, 32.07 38d in 106 aa. Full length CDS is similar to Clostridium tetani transcriptional regulatory protein ctc01432 SWALL:Q894V2 (EMBL:AE015941) (295 aa) fasta scores: E(): 1.9e-78, 64.4 38d in 295 aa.
  
  
 0.455
CBO1011
Hypothetical protein (gene fragment); Partial CDS. Similar to the N-terminal regions of several including Listeria innocua hypothetical protein Lin0801 lin0801 SWALL:Q92DL2 (EMBL:AL596166) (240 aa) fasta scores: E(): 0.00017, 43.59 38d in 39 aa, and to Clostridium perfringens two-component response regulator cpe0518 SWALL:Q8XN20 (EMBL:AP003187) (238 aa) fasta scores: E(): 8.3, 37.5 38d in 40 aa; was marked partial.
       0.446
CBO1594
Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d).
  
     0.440
CBO0900
Hypothetical protein; No significant database matches; Highly similar to CBO1594 (85.5 38d), CBO2273 (82.3 38d) and CBO2267 (85.5 0d).
  
     0.431
CBO2267
Hypothetical protein; Highly similar to CBO1594 (85.5 38d), CBO0900 (85.5 38d) and CBO2273 (82.3 0d).
  
     0.430
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.