Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1015Putative cyclase. (192 aa)    
Predicted Functional Partners:
CBO1016
MarR-family transcriptional regulator.
 
    0.674
CBO0342
Similar to Fusobacterium nucleatum transcriptional regulator, MerR family fn1928 SWALL:Q8RHS0 (EMBL:AE010495) (184 aa) fasta scores: E(): 2.5e-14, 36.06 38d in 183 aa.
  
    0.526
CBO0624
Putative DNA-binding protein.
  
    0.526
CBO3185
Putative transcriptional regulator.
  
    0.526
CBO1012
MarR-family transcriptional regulator.
 
    0.486
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
      
 0.438
CBO0254
Putative acetyltransferase; Similar to Listeria innocua hypothetical protein Lin2361 SWALL:Q929B6 (EMBL:AL596172) (291 aa) fasta scores: E(): 3.5e-39, 37.75 38d in 294 aa, and to Bacillus halodurans hypothetical protein Bh3929 bh3929 SWALL:Q9K606 (EMBL:AP001520) (286 aa) fasta scores: E(): 1.7e-23,30.47 38d in 292 aa.
 
     0.430
CBO2215
Conserved hypothetical protein.
 
    0.409
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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