STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO1024Cyclic nucleotide-binding regulatory protein. (229 aa)    
Predicted Functional Partners:
CBO0870
Putative membrane protein.
 
     0.754
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.518
CBO1023
Putative hydrolase.
 
     0.497
CBO3436
TPR-repeat-containing protein.
 
 
 
 0.497
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.491
CBO1596
Putative GTP pyrophosphatase.
  
     0.486
CBO2129
Conserved hypothetical protein; Similar to the C-terminus from codon 90 of Bacillus cereus hypothetical protein bc2817 SWALL:Q81CF2 (EMBL:AE017007) (262 aa) fasta scores: E(): 1.9e-31,52.02 38d in 173 aa. Possible gene remnant.
  
     0.482
CBO1013
Putative cyclase.
  
    0.461
CBO3589
Putative membrane protein.
 
     0.457
CBO0707
Conserved hypothetical protein.
  
     0.448
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
Server load: medium (48%) [HD]